Genome Assembly
Resources for your genome assembly and annotation
In partnership with Bioplatforms Australia and the Australian BioCommons, TSI is working to develop an easy-to-use TSI Community Hub (currently in development).
In the meantime, there are a range of resources to assist with your genome assembly and annotation. You are now able to move your genome data from the BPA Data Portal directly to the Genome Lab in Galaxy Australia.
User Guides are currently available for the below Galaxy Australia workflows through the Australian BioCommons (please check back regularly as many are still in development):
This How-to-Guide will describe the steps required to assemble your genome on the Galaxy Australia platform.
This How-to-Guide will describe the steps required to assemble your genome on the Galaxy Australia platform.
Once a genome has been assembled, it is important to assess the quality of the assembly, and in the first instance, this quality control (QC) can be achieved using the workflow described here.
This How-to-Guide will describe the steps required to annotate your genome on the Galaxy Australia platform.
This How-to-Guide will describe the steps required to repeat your genome and align transcripts on the Galaxy Australia platform. Galaxy Australia is capable of performing genome repeat masking and transcriptome alignment with stringtie and transdecoder.
This How-to-Guide will describe the steps required to run the Stacks workflows on Galaxy Australia to analyse RADseq data
Other useful resources for genome assembly are: